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SHOX Gene Sequencing

CPT

To be determined. Updates will be made when available.

Test Details

Methodology

Next-generation sequencing to identify genetic variants, including small nucleotide variants (SNVs), insertions, deletions and copy number variants (CNVs).

Result Turnaround Time

14 - 21 days; in some cases, additional time may be required for confirmatory or reflex tests.

Turnaround time is defined as the usual number of days from the date of pickup of a specimen for testing to when the result is released to the ordering provider. In some cases, additional time should be allowed for additional confirmatory or additional reflex tests. Testing schedules may vary.

Test Includes

This test includes the following gene: SHOX.

Use

This test is used for diagnostic testing.

Special Instructions

This test currently is not approved for use in New York state.

In cases in which there is a known variant documented in the family, the physician may prefer to order Targeted Variant Heme Endo [631501].

Test orders must include an attestation that the provider has the patient's informed consent for genetic testing.

Limitations

Technologies used do not detect germline mosaicism and do not rule out the presence of large chromosomal aberrations, including rearrangements and gene fusions, or variants in regions or genes not included in this test, or possible inter/intragenic interactions between variants or repeat expansions. Variant classification and/or interpretation may change with time if more information becomes available. False positive or false negative results may occur for reasons that include: rare genetic variants, sex chromosome abnormalities, pseudogene interference, blood transfusions, bone marrow transplantation, somatic or tissue-specific mosaicism, mislabeled samples or erroneous representation of family relationships. 

This test was developed and its performance characteristics determined by Labcorp. It has not been cleared or approved by the Food and Drug Administration.

Specimen Requirements

Specimen

Whole blood or PurFlock buccal swab kit or Oragene Dx 500 saliva kit

Volume

4 mL whole blood or PurFlock buccal swab kit or Oragene Dx 500 saliva kit

Minimum Volume

3 mL whole blood or PurFlock buccal swab kit or Oragene Dx 500 saliva kit

Container

Lavender-top (EDTA) tube or yellow-top (ACD-A) tube or PurFlock buccal swab kit or Oragene Dx 500 saliva collection kit

Collection Instructions

Standard phlebotomy; follow PurFlock buccal swab kit or Oragene Dx 500 saliva kit collection instructions. Do not eat, drink, smoke or chew gum 30 minutes prior to collection.

Stability Requirements

TemperaturePeriod
Room temperatureWhole blood: 14 days; buccal: 60 days; saliva: 60 days
RefrigeratedWhole blood: 30 days

Storage Instructions

Maintain specimen at room temperature or refrigerate at 4°C. Do not freeze.

Causes for Rejection

Frozen or hemolyzed specimen; quantity not sufficient for analysis; improper container