Test Details
Methodology
Illumina SNP Array
Result Turnaround Time
7 - 10 days
7 - 10 days |
Turnaround time is defined as the usual number of days from the date of pickup of a specimen for testing to when the result is released to the ordering provider. In some cases, additional time should be allowed for additional confirmatory or additional reflex tests. Testing schedules may vary.
Use
Apolipoprotein E (apoE) is a component of several lipoproteins. There are three main apoE isoforms reflecting three alleles (E2, E3 and E4), of which E3 is the most common. The APOE genotype E2/E2 is present in approximately 1% of the population and predisposes to type III hyperlipoproteinemia (dysbetalipoproteinemia).
Type III hyperlipoproteinemia involves abnormal build-up in the blood of remnant chylomicrons and VLDL particles (collectively called B-VLDL) containing cholesterol and triglycerides. Excess B-VLDL is taken up in blood vessel walls and can lead to atherosclerosis. Therefore, individuals with type III hyperlipoproteinemia have high total serum cholesterol, LDL and triglycerides. The main clinical manifestation is premature atherosclerosis, leading to coronary artery disease or peripheral vascular disease. However, some patients may be asymptomatic.
Only 1% to 5% of individuals with the E2/E2 genotype develop type III hyperlipoproteinemia. However, the E2/E2 genotype is present in 95% of individuals with type III hyperlipoproteinemia and is diagnostic of the disorder in individuals with the appropriate lipid profile. A number of secondary factors are known to provoke type III hyperlipoproteinemia in individuals with the E2/E2 genotype, including glucose intolerance, diabetes mellitus, hypothyroidism, obesity, low estrogen levels and excessive alcohol intake.
Limitations
APOE E2, E3 and E4 are validated for this analysis. The rare APOE E1/E1, E1/E2 are reported as failed results. E2/E4 and E1/E3 genotypes cannot be distinguished by this assay. Molecular-based testing is highly accurate, but as in any laboratory test, rare errors may occur. False positive or false negative results may occur for reasons that include genetic variants, blood transfusions, bone marrow trans plantation, somatic or tissue-specific mosaicism, mislabeled samples or erroneous representation of family relationships.
APOE Approximately 95% of individuals with type III hyperlipoproteinemia have the E2/E2 genotype. The remainder have rare pathogenic variants in the APOE gene, some of which are not detectable by this APOE genotype test. This test cannot detect genetic abnormalities elsewhere in the genome. |
APOE E2, E3 and E4 are validated for this analysis. The rare APOE E1/E1, E1/E2 are reported as failed results. E2/E4 and E1/E3 genotypes cannot be distinguished by this assay. Molecular-based testing is highly accurate, but as in any laboratory test, rare errors may occur. False positive or false negative results may occur for reasons that include genetic variants, blood transfusions, bone marrow trans plantation, somatic or tissue-specific mosaicism, mislabeled samples or erroneous representation of family relationships. |
Specimen Requirements
Specimen
Whole blood (preferred) or extracted DNA
Volume
1 tube whole blood or 0.025 mL extracted DNA
Minimum Volume
1 tube whole blood or 0.025 mL extracted DNA
Container
Lavender-top (EDTA) tube (preferred), yellow-top (ACD) tube or green-top (heparin) tube or extracted DNA: DNA extracted in a CLIA certified lab [all extracted DNA samples will be processed and quantified upon receipt in order to evaluate for sufficient DNA quantity (minimum 15 ng/L needed for assay after quantification)]
Collection Instructions
Invert tube immediately eight to 10 times once tube is filled at time of collection.
Stability Requirements
| Temperature | Period |
|---|---|
| Room temperature | 3 days (whole blood and extracted DNA) |
| Refrigerated | 60 days (whole blood); 7 days (extracted DNA) |
| Frozen | 90 days (extracted DNA) |
| Freeze/thaw cycles | Stable x2 (extracted DNA) |
LOINC® Map
| Order Code | Order Code Name | Order Loinc | Result Code | Result Code Name | UofM | Result LOINC |
|---|---|---|---|---|---|---|
| 125561 | APOE Genotyping: Cardio Risk | 42315-2 | 125562 | APOE Genotyping Result: | 42315-2 | |
| 125561 | APOE Genotyping: Cardio Risk | 42315-2 | 125563 | Additional Comments | 55752-0 | |
| 125561 | APOE Genotyping: Cardio Risk | 42315-2 | 125538 | Limitations | 62364-5 | |
| 125561 | APOE Genotyping: Cardio Risk | 42315-2 | 125547 | Methodology | 49549-9 | |
| 125561 | APOE Genotyping: Cardio Risk | 42315-2 | 125564 | Background Information | 62364-5 | |
| 125561 | APOE Genotyping: Cardio Risk | 42315-2 | 125566 | References | 75608-0 | |
| 125561 | APOE Genotyping: Cardio Risk | 42315-2 | 125554 | Result release: | 18771-6 | |
| Order Code | 125561 | |||||
| Order Code Name | APOE Genotyping: Cardio Risk | |||||
| Order Loinc | 42315-2 | |||||
| Result Code | 125562 | |||||
| Result Code Name | APOE Genotyping Result: | |||||
| UofM | ||||||
| Result LOINC | 42315-2 | |||||
| Order Code | 125561 | |||||
| Order Code Name | APOE Genotyping: Cardio Risk | |||||
| Order Loinc | 42315-2 | |||||
| Result Code | 125563 | |||||
| Result Code Name | Additional Comments | |||||
| UofM | ||||||
| Result LOINC | 55752-0 | |||||
| Order Code | 125561 | |||||
| Order Code Name | APOE Genotyping: Cardio Risk | |||||
| Order Loinc | 42315-2 | |||||
| Result Code | 125538 | |||||
| Result Code Name | Limitations | |||||
| UofM | ||||||
| Result LOINC | 62364-5 | |||||
| Order Code | 125561 | |||||
| Order Code Name | APOE Genotyping: Cardio Risk | |||||
| Order Loinc | 42315-2 | |||||
| Result Code | 125547 | |||||
| Result Code Name | Methodology | |||||
| UofM | ||||||
| Result LOINC | 49549-9 | |||||
| Order Code | 125561 | |||||
| Order Code Name | APOE Genotyping: Cardio Risk | |||||
| Order Loinc | 42315-2 | |||||
| Result Code | 125564 | |||||
| Result Code Name | Background Information | |||||
| UofM | ||||||
| Result LOINC | 62364-5 | |||||
| Order Code | 125561 | |||||
| Order Code Name | APOE Genotyping: Cardio Risk | |||||
| Order Loinc | 42315-2 | |||||
| Result Code | 125566 | |||||
| Result Code Name | References | |||||
| UofM | ||||||
| Result LOINC | 75608-0 | |||||
| Order Code | 125561 | |||||
| Order Code Name | APOE Genotyping: Cardio Risk | |||||
| Order Loinc | 42315-2 | |||||
| Result Code | 125554 | |||||
| Result Code Name | Result release: | |||||
| UofM | ||||||
| Result LOINC | 18771-6 |