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This test includes: AAAS, ABCA12, ABCB11, ABCB4, ABCC8, ABCD1, ABCD4, ACAD9, ACADM, ACADVL, ACAT1, ACOX1, ACSF3, ADA, ADAMTS2, ADGRV1, AGA, AGL, AGPAT2, AGPS, AGXT, AHI1, AIPL1, AIRE, AK2, ALDH3A2, ALDH7A1, ALDOB, ALG1, ALG6, ALMS1, ALOX12B, ALOXE3, ALPL, AMPD2, AMT, ANTXR2, AP3B1, AP3D1, ARG1, ARL13B, ARL6, ARSA, ARSB, ASL, ASNS, ASPA, ASS1, ATM, ATP13A2, ATP6V0A2, ATP6V0A4, ATP6V1B1, ATP6V1E1, ATP7A, ATP7B, ATP8B1, ATRX, AVPR2, B9D1, B9D2, BBS1, BBS10, BBS12,BBS2, BBS4, BBS5, BBS7, BBS9, BCHE, BCKDHA, BCKDHB, BCS1L, BLM, BLOC1S3, BLOC1S6, BMP1, BRIP1, BSND, BTD, BTK, C19orf12, CAD, CAPN3, CASP14, CAVIN1,CBS, CCDC8, CCN6, CD247, CD3D, CD3E, CD3G, CD8A, CDCA7, CDH23, CEP104, CEP290, CERKL, CERS3, CFTR, CHAT, CHMP1A, CHRNG, CIB2, CIITA, CLCF1, CLCN5, CLN3, CLN5, CLN6, CLN8, CLP1, CLRN1, CNTNAP2, COASY, COL4A3, COL4A5,COLQ, CORO1A, COX15, CP, CPLANE1, CPS1, CPT1A, CPT2, CRLF1, CRTAP, CTC1, CTNS, CTSA, CTSD, CTSF, CTSK, CUL7, CWC27, CYBA, CYBB, CYP11B1, CYP17A1, CYP1B1, CYP21A2, CYP27A1, CYP4F22, CYP7B1, DBT, DCAF17, DCLRE1C, DDB2, DDC, DHCR7, DHDDS, DLAT, DLD, DMD, DNMT3B, DOCK8, DOK7, DPYD, DTNBP1, DYSF, EFEMP2, EIF2B1, EIF2B2, EIF2B3, EIF2B4, EIF2B5, ELP1, EMD, ERCC2, ERCC3, ERCC4, ERCC5, ERCC6, ERCC8, ETFA, ETFB, ETFDH, ETHE1, EXOSC3, EYS, FA2H, FAH, FAM126A, FAM161A, FANCA, FANCB, FANCC, FANCD2, FANCE, FANCF, FANCG, FANCI, FANCL, FBXL4, FHL1, FKBP10, FKRP, FKTN, FMR1, FOXN1, FOXP3, FOXRED1, FRAS1, FREM2, FUCA1, G6PC,GAA, GALC, GALE, GALK1, GALNS, GALT, GAMT, GATM, GBA, GBE1, GCDH, GFPT1, GJB2, GJB6, GLA, GLB1, GLDC, GNE, GNPAT, GNPTAB, GNS, GRHPR, GRIP1, GSS, GUSB, HADHA, HADHB, HAMP, HAX1, HBA1, HBA2, HBB, HCFC1, HELLS, HEXA, HEXB, HGSNAT, HINT1, HJV, HLCS, HMGCL, HOGA1, HPD, HPS1, HPS3, HPS4, HPS5, HPS6, HSD17B10, HSD17B4, HSD3B2, HYAL1, HYLS1, IDS, IDUA, IFT140, IKBKB, IL2RA, IL2RG, IL7R, INPP5E, ITPA, IVD, JAK3, KCNJ1, KCTD7, KIF14, L1CAM, LAMA2, LAMA3, LAMB3, LAMC2, LAMP2, LARS, LCA5, LCK, LIG4, LIPA, LIPN, LMBRD1, LOXHD1, LPL, LRAT, LRP2, LRPPRC, LTBP4, MAK, MALT1, MAN2B1, MANBA, MCCC1, MCCC2, MCEE, MCOLN1, MEFV, MEGF8, MESP2, MFSD8, MKKS, MKS1, MLC1, MMAA, MMAB, MMACHC, MMADHC, MMUT, MPI, MPL, MPV17, MTHFD1, MTM1, MTTP, NAGLU, NBAS, NBN, NCF2, NCF4, NDUFAF2, NDUFAF5, NDUFS4, NDUFS6, NDUFS7, NDUFV1, NEB, NEU1, NGLY1, NHEJ1, NIPAL4, NONO, NPC1, NPC2, NPHP1, NPHP3, NPHS1, NPHS2, NR0B1, NTRK1, OAT, OBSL1, OCRL, OPA3, OSTM1, OTC, OTOF, P3H1, PAH, PANK2, PCBD1, PCCA, PCCB, PCDH15, PDHA1, PDHB, PDHX, PDP1, PEX1, PEX10, PEX11B, PEX12, PEX13, PEX14, PEX16, PEX19, PEX2, PEX26, PEX3, PEX5, PEX6, PEX7, PFKM, PGM3, PHGDH, PHKA1, PHKA2, PHKB, PHKG2, PKHD1, PLA2G6, PLEKHG5, PLOD2, PMM2, PNP, PNPLA1, PNPO, POLH, POMGNT1, POMT1, POMT2, POR, POU3F4, PPIB, PPT1, PRCD, PRDM5, PRF1, PRKDC, PSAP, PTPRC, PTS,PUS1, PYCR1, PYGM, QDPR, RAB23, RAG1, RAG2, RAPSN, RARS2, RD3, RDH12, RFX5, RFXANK, RFXAP, RLBP1, RMRP, RNASEH2A, RNASEH2B, RNASEH2C, RP2, RPE65, RPGR, RPGRIP1, RPGRIP1L, RPS6KA3, SACS, SAMHD1, SDCCAG8, SDR9C7, SELENON, SEPSECS,SERPINF1, SGCA, SGCB, SGCD, SGCG, SGSH, SKIV2L, SLC12A1, SLC12A6, SLC16A2,SLC17A5, SLC22A5, SLC25A13, SLC25A15, SLC25A20, SLC26A2, SLC26A4, SLC27A4, SLC2A10, SLC35A3, SLC37A4, SLC46A1, SLC4A11, SLC6A8, SLC7A7, SMN1, SMPD1, SP110, SPATA7, SPG11, SPG21, STAR, STK4, STX11, STXBP2, SUMF1, SUOX, SURF1, SYNE4, TAT, TAZ, TCIRG1, TCTN1, TCTN2, TCTN3, TECPR2, TGM1, TH, TK2, TMEM138, TMEM216, TMEM231, TMEM237, TMEM38B, TMEM67, TMEM70, TNFSF11, TPP1, TRAPPC11, TRIM32, TRMU, TSEN2, TSEN34, TSEN54, TTC37, TTC7A, TTC8, TTPA, TULP1,UNC13D, USH1C, USH1G, USH2A, VLDLR, VPS13B, VPS53, VRK1, WHRN, WNT1, WRN, XPA, XPC, ZAP70, ZBTB24, ZNF469.
This assay is not currently available in New York state.
Contact an Integrated Genetics laboratory genetic coordinator at 800-255-7357 with any questions.
14 - 21 days
Turnaround time is defined as the usual number of days from the date of pickup of a specimen for testing to when the result is released to the ordering provider. In some cases, additional time should be allowed for additional confirmatory or additional reflex tests. Testing schedules may vary.
For more information, please view the literature below.
Amniotic fluid, chorionic villus sample (CVS), cultured amniocytes, cultured villi. Submission of maternal blood is required for analysis of Maternal Cell Contamination (511402), which should be ordered on a separate test request form.
Amniotic fluid: 20 cc; CVS: 20 mg; or amniotic fluid and CVS Culture: two confluent flasks
Sterile plastic conical tube or two confluent T-25 flasks
Maintain specimen at room temperature or refrigerate at 4ºC
Frozen specimen; quantity not sufficient for analysis; improper container
Full gene sequencing is available for the majority of genes included in the Inheritest®500 PLUS Panel. For SMN1, use Spinal Muscular Atroophy (SMA Carrier Testing) ; for FMR1, use Fragile X Syndrome, PCR With Reflex to Southern Blot .
Technologies used do not detect germline mosaicism and do not rule out the presence of large chromosomal aberrations, including rearrangements, gene fusions, or variants in regions or genes not included in this test, or possible inter/intragenic interactions between variants. Variant classification and/or interpretation may change over time if more information becomes available. False positive or false negative results may occur for reasons that include: rare genetic variants, sex chromosome abnormalities, pseudogene interference, blood transfusions, bone marrow transplantation, somatic or tissue-specific mosaicism, mislabeled samples, or erroneous representation of family relationships.
Single Nucleotide Polymorphism and Small Indel Sequencing Assessment: Genomic regions of interest are selected using a custom capture reagent for target enrichment and sequenced via the Illumina® Next Generation Sequencing platform. Sequencing reads are aligned with the human genome reference GRCh37/hg19 build. Regions of interest include all exons and intron/exon junctions (+/-20 nucleotides) for each gene analyzed. A minimum of 99% of bases are covered at >15X. Analytical sensitivity is estimated to be >99% for single nucleotide variants, >97% for insertions/deletions less than six base pairs, and >95% for insertions/deletions between six and 15 base pairs. Uncovered regions with known pathogenic variants are sequenced in a targeted manner. All reported variants are confirmed by a second method.
Copy Number Variant Assessment: Next Generation Sequencing is performed and the data are assessed with Illumina’s DRAGEN (Dynamic Read Analysis for GENomics) Bio-IT Platform. Reported variants are confirmed by a second method. Analytical sensitivity is estimated to be >95%.
Congenital Adrenal Hyperplasia: This analysis will detect most large rearrangements/deletions/duplications within the CYP21A2 gene, as well as the presence of seven of the most common pathogenic variants in the gene: 1) c.518T>A (p.Ile173Asn), Chr6:32007203; 2) c.713T>A (p.Val238Glu); Chr6:32007587; 3) c.719T>A (p.Met240Lys); Chr6:32007593; 4) c.923dup (p.Leu308Phefs); Chr6:32007966; 5) c.293-13C/A>G; Chr6:32006858; 6) c.332_339delGAGACTAC (p.Gly111Valfs); Chr6:32006910-32006917; 7) c.-113G>A; Chr6:32006087. Other point mutations and small indels and reciprocal changes between CYP21A2 and CYP21A1P are not detected by this analysis. The analytical sensitivity of this assay is estimated to be >99%.
Alpha thalassemia: Variants included in the analysis of the alpha-globin (HBA) gene cluster are the Constant Spring non-deletion variant and the following deletions: -alpha3.7, -alpha4.2, --alpha20.5, --SEA, --FIL, --THAI, --MED, and the HS-40 regulatory region.
NGS Reported Variants: Pathogenic, likely pathogenic, and variants of uncertain significance variants are reported after confirmation by an appropriate technology. NEB variants occurring in exons 82-105 may not be reliably detected by this analysis and are not reported. Nondeletion variants are specified using the numbering and nomenclature recommended by the Human Genome Variation Society. Likely benign and benign variants are not reported. Variant classification is consistent with ACMG standards and guidelines. When provided, carrier rates and detection rates are derived from gnomAD and ClinVar. For unknown or mixed ethnicities, the ethnic background with the most conservative risk estimate is used. For a complete list of residual risks for all genes on this panel, visit www.integratedgenetics.com.
|Order Code||Order Code Name||Order Loinc||Result Code||Result Code Name||UofM||Result LOINC|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630104||Genetic Counselor||n/a|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630105||Specimen Type||31208-2|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630106||Ethnicity||42784-9|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630107||Indication||42349-1|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630108||Result||48003-8|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630109||Summary||n/a|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630110||Addl Clinical Information||55752-0|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630112||Comments||8251-1|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630113||Method/Limitations||49549-9|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630114||Disclaimer||62364-5|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630115||Electronically Signed By||72486-4|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630081||51969-4|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630084||GC Review||n/a|
|630102||GeneSeq(R)PLUS w/o VUS, Prn||48014-5||630166||Billing Hold||n/a|
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The LOINC® codes are copyright © 1994-2021, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. Permission is granted in perpetuity, without payment of license fees or royalties, to use, copy, or distribute the LOINC® codes for any commercial or non-commercial purpose, subject to the terms under the license agreement found at https://loinc.org/license/. Additional information regarding LOINC® codes can be found at LOINC.org, including the LOINC Manual, which can be downloaded at LOINC.org/downloads/files/LOINCManual.pdf